Loughborough University
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D3-ImgNet: a framework for molecular properties prediction based on data-driven electron density images

journal contribution
posted on 2025-03-10, 11:34 authored by Junfeng Zhao, Lixin Tang, Jiyin LiuJiyin Liu, Jian Wu, Xiangman Song
Artificial intelligence technology has introduced a new research paradigm into the fields of quantum chemistry and materials science, leading to numerous studies that utilize machine learning methods to predict molecular properties. We contend that an exemplary deep learning model should not only achieve high-precision predictions of molecular properties but also incorporate guidance from physical mechanisms. Here, we propose a framework for predicting molecular properties based on data-driven electron density images, referred to as D3-ImgNet. This framework integrates group theory, density functional theory-related mechanisms, deep learning techniques, and multiobjective optimization mechanisms, embodying a methodological fusion of data analytics and system optimization. Initially, we focus on atomization energies as the primary target of our study, using the QM9 data set to demonstrate the framework’s ability to predict molecular atomization energies with high accuracy and excellent exploration performance. We then further evaluate its predictive capabilities for dipole moments and forces with the QM9X data set, achieving satisfactory results. Additionally, we tested the D3-ImgNet framework on the SN2 reaction data set to demonstrate its ability to precisely predict the minimum energy paths of SN2 chemical reactions, showcasing its portability and adaptability in chemical reaction modeling. Finally, visualizations of the electronic density generated by the framework faithfully replicate the physical phenomenon of electron density transfer. We believe that this framework has the potential to accelerate property predictions and high-throughput screening of functional materials.

Funding

Major Program of National Natural Science Foundation of China (72192830, 72192831) and the 111 Project (B16009)

History

School

  • Loughborough Business School

Published in

Journal of Physical Chemistry A

Volume

129

Issue

2

Pages

570 - 582

Publisher

American Chemical Society

Version

  • AM (Accepted Manuscript)

Rights holder

© American Chemical Society

Publisher statement

This document is the Accepted Manuscript version of a Published Work that appeared in final form in Journal of Physical Chemistry A, after peer review and technical editing by the publisher. To access the final edited and published work see: https://doi.org/10.1021/acs.jpca.4c05519

Acceptance date

2024-12-16

Publication date

2025-01-03

Copyright date

2025

ISSN

1089-5639

eISSN

1520-5215

Language

  • en

Depositor

Prof Jiyin Liu. Deposit date: 28 February 2025