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The seventh blind test of crystal structure prediction: structure generation methods

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posted on 2025-05-06, 11:20 authored by Lily M Hunnisett, Jonas Nyman, Nicholas Francia, Nathan S Abraham, Claire S Adjiman, Srinivasulu Aitipamula, Tamador Alkhidir, Mubarak Almehairbi, Andrea Anelli, Dylan M Anstine, John E Anthony, Joseph E Arnold, Faezeh Bahrami, Michael A Bellucci, Rajni M Bhardwaj, Imanuel Bier, Joanna A Bis, A Daniel Boese, David H Bowskill, James Bramley, Jan Gerit Brandenburg, Doris E Braun, Patrick WV Butler, Joseph Cadden, Stephen Carino, Eric J Chan, Chao Chang, Bingqing Cheng, Sarah M Clarke, Simon J Coles, Richard I Cooper, Ricky Couch, Ramon Cuadrado, Tom Darden, Graeme M Day, Hanno Dietrich, Yiming Ding, Antonio DiPasquale, Bhausaheb Dhokale, Bouke P van Eijck, Mark ElsegoodMark Elsegood, Dzmitry Firaha, Wenbo Fu, Kaori Fukuzawa, Joseph Glover, Hitoshi Goto, Chandler Greenwell, Rui Guo, Jürgen Harter, Julian Helfferich, Detlef WM Hofmann, Johannes Hoja, John Hone, Richard Hong, Geoffrey Hutchison, Yasuhiro Ikabata, Olexandr Isayev, Ommair Ishaque, Varsha Jain, Yingdi Jin, Aling Jing, Erin R Johnson, Ian Jones, KV Jovan Jose, Elena A Kabova, Adam Keates, Paul KellyPaul Kelly, Dmitry Khakimov, Stefanos Konstantinopoulos, Liudmila N Kuleshova, He Li, Xiaolu Lin, Alexander List, Congcong Liu, Yifei Michelle Liu, Zenghui Liu, Zhi-Pan Liu, Joseph W Lubach, Noa Marom, Alexander A Maryewski, Hiroyuki Matsui, Alessandra Mattei, R Alex Mayo, John W Melkumov, Sharmarke Mohamed, Zahrasadat Momenzadeh Abardeh, Hari S Muddana, Naofumi Nakayama, Kamal Singh Nayal, Marcus A Neumann, Rahul Nikhar, Shigeaki Obata, Dana O'Connor, Artem R Oganov, Koji Okuwaki, Alberto Otero-de-la-Roza, Constantinos C Pantelides, Sean Parkin, Chris J Pickard, Luca Pilia, Tatyana Pivina, Rafał Podeszwa, Alastair JA Price, Louise S Price, Sarah L Price, Michael R Probert, Angeles Pulido, Gunjan Rajendra Ramteke, Atta Ur Rehman, Susan M Reutzel-Edens, Jutta Rogal, Marta J Ross, Adrian F Rumson, Ghazala Sadiq, Zeinab M Saeed, Alireza Salimi, Matteo Salvalaglio, Leticia Sanders de Almada, Kiran Sasikumar, Sivakumar Sekharan, Cheng Shang, Kenneth Shankland, Kotaro Shinohara, Baimei Shi, Xuekun Shi, A Geoffrey Skillman, Hongxing Song, Nina Strasser, Jacco van de Streek, Isaac J Sugden, Guangxu Sun, Krzysztof Szalewicz, Benjamin I Tan, Lu Tan, Frank Tarczynski, Christopher R Taylor, Alexandre Tkatchenko, Rithwik Tom, Mark E Tuckerman, Yohei Utsumi, Leslie Vogt-Maranto, Jake Weatherston, Luke WilkinsonLuke Wilkinson, Robert D Willacy, Lukasz Wojtas, Grahame R Woollam, Zhuocen Yang, Etsuo Yonemochi, Xin Yue, Qun Zeng, Yizu Zhang, Tian Zhou, Yunfei Zhou, Roman Zubatyuk, Jason C Cole
A seventh blind test of crystal structure prediction was organized by the Cambridge Crystallographic Data Centre featuring seven target systems of varying complexity: a silicon and iodine-containing molecule, a copper coordination complex, a near-rigid molecule, a cocrystal, a polymorphic small agrochemical, a highly flexible polymorphic drug candidate, and a polymorphic morpholine salt. In this first of two parts focusing on structure generation methods, many crystal structure prediction (CSP) methods performed well for the small but flexible agrochemical compound, successfully reproducing the experimentally observed crystal structures, while few groups were successful for the systems of higher complexity. A powder X-ray diffraction (PXRD) assisted exercise demonstrated the use of CSP in successfully determining a crystal structure from a low-quality PXRD pattern. The use of CSP in the prediction of likely cocrystal stoichiometry was also explored, demonstrating multiple possible approaches. Crystallographic disorder emerged as an important theme throughout the test as both a challenge for analysis and a major achievement where two groups blindly predicted the existence of disorder for the first time. Additionally, large-scale comparisons of the sets of predicted crystal structures also showed that some methods yield sets that largely contain the same crystal structures.

Funding

Molecular Systems Engineering of High-Value Structured and Formulated Products

Engineering and Physical Sciences Research Council

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The molecular frontier: extending the boundaries of process design

Engineering and Physical Sciences Research Council

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Support for the UKCP consortium

Engineering and Physical Sciences Research Council

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Tier 2 Hub in Materials and Molecular Modelling

Engineering and Physical Sciences Research Council

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DTP 2020-2021 Imperial College London

Engineering and Physical Sciences Research Council

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EPCC Tier 2 HPC Service

Engineering and Physical Sciences Research Council

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The Materials and Molecular Modelling Hub

Engineering and Physical Sciences Research Council

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HIGH END COMPUTING MATERIALS CHEMISTRY CONSORTIUM

Engineering and Physical Sciences Research Council

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High Throughput Modelling of Molecular Crystals Out of Equilibrium (ht-MATTER)

UK Research and Innovation

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Introducing heterogeneous HPC solutions to UK's MMM community

UK Research and Innovation

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History

School

  • Science

Published in

Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials

Volume

80

Issue

6

Pages

517 - 547

Publisher

International Union of Crystallography (IUCr)

Version

  • VoR (Version of Record)

Rights holder

© The Author(s)

Publisher statement

The article The seventh blind test of crystal structure prediction: structure generation methods [Hunnisett et al. (2024). Acta Cryst. B80, 517-547, https://doi.org/10.1107/S2052520624007492] is published under an open-access licence, so you are free to reuse it without restriction provided there is attribution for the article. Please note that open-access articles may still include material, such as photographs and illustrations, that is subject to explicit statements of copyright or prior reproduction permission from other organizations or individuals from whom you should obtain reuse permission.

Acceptance date

2024-07-30

Publication date

2024-12-01

Copyright date

2024

eISSN

2052-5206

Language

  • en

Depositor

Mrs Bal Sandhu, impersonating Dr Mark Elsegood. Deposit date: 6 December 2024

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