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Visualization for epidemiological modelling: challenges, solutions, reflections and recommendations

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posted on 2022-08-22, 10:27 authored by Jason Dykes, Alfie Abdul-Rahman, Daniel Archambault, Benjamin Bach, Rita Borgo, Min Chen, Jessica Enright, Hui FangHui Fang, Elif E Firat, Euan Freeman, Tuna Gonen, Claire Harris, Radu Jianu, Nigel John, Saiful Khan, Andrew Lahiff, Robert Laramee, Louise Matthews, Sibylle Mohr, Phong H Nguyen, Alma AM Rahat, Richard Reeve, Panagiotis D Ritsos, Jonathan C Roberts, Aidan Slingsby, Ben Swallow, Thomas Torsney-Weir, Cagatay Turkay, Robert Turner, Franck P Vidal, Qiru Wang, Jo Wood, Kai Xu

We report on an ongoing collaboration between epidemiological modellers and visualization researchers by documenting and reflecting upon knowledge constructs—a series of ideas, approaches and methods taken from existing visualization research and practice—deployed and developed to support modelling of the COVID-19 pandemic. Structured independent commentary on these efforts is synthesized through iterative reflection to develop: evidence of the effectiveness and value of visualization in this context; open problems upon which the research communities may focus; guidance for future activity of this type and recommendations to safeguard the achievements and promote, advance, secure and prepare for future collaborations of this kind. In describing and comparing a series of related projects that were undertaken in unprecedented conditions, our hope is that this unique report, and its rich interactive supplementary materials, will guide the scientific community in embracing visualization in its observation, analysis and modelling of data as well as in disseminating findings. Equally we hope to encourage the visualization community to engage with impactful science in addressing its emerging data challenges. If we are successful, this showcase of activity may stimulate mutually beneficial engagement between communities with complementary expertise to address problems of significance in epidemiology and beyond. See https://ramp-vis.github.io/RAMPVIS-PhilTransA-Supplement/.

This article is part of the theme issue ‘Technical challenges of modelling real-life epidemics and examples of overcoming these’.

Funding

RAMP VIS: Making Visual Analytics an Integral Part of the Technological Infrastructure for Combating COVID-19

UK Research and Innovation

Find out more...

Visual Analytics for Explaining and Analysing Contact Tracing Networks

Engineering and Physical Sciences Research Council

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Open Epidemiology for pandemic modelling: a transparent, traceable, reusable, open source pipeline for reproducible science

UK Research and Innovation

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History

School

  • Science

Department

  • Computer Science

Published in

Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

Volume

380

Issue

2233

Pages

20210299

Publisher

Royal Society, The

Version

  • VoR (Version of Record)

Rights holder

© The Authors

Publisher statement

This is an Open Access Article. It is published by The Royal Society under the Creative Commons Attribution 4.0 International Licence (CC BY). Full details of this licence are available at: https://creativecommons.org/licenses/by/4.0/

Acceptance date

2022-03-18

Publication date

2022-08-15

Copyright date

2022

ISSN

1364-503X

eISSN

1471-2962

Language

  • en

Depositor

Dr Hui Fang. Deposit date: 18 March 2022

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